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Functions working with mkinfit objects

plot(<mkinfit>) plot_sep()

Plot the observed data and the fitted model of an mkinfit object 
summary(<mkinfit>) print(<summary.mkinfit>)

Summary method for class "mkinfit" 
mkinresplot()

Function to plot residuals stored in an mkin object 
mkinparplot()

Function to plot the confidence intervals obtained using mkinfit 
mkinerrplot()

Function to plot squared residuals and the error model for an mkin object 
endpoints()

Function to calculate endpoints for further use from kinetic models fitted with mkinfit 
mkinerrmin()

Calculate the minimum error to assume in order to pass the variance test 
logLik(<mkinfit>)

Calculated the loglikelihood of a fitted mkinfit object 
Datasets and known results

FOCUS_2006_datasets

Datasets A to F from the FOCUS Kinetics report from 2006 
FOCUS_2006_SFO_ref_A_to_F

Results of fitting the SFO model to Datasets A to F of FOCUS (2006) 
FOCUS_2006_FOMC_ref_A_to_F

Results of fitting the FOMC model to Datasets A to F of FOCUS (2006) 
FOCUS_2006_HS_ref_A_to_F

Results of fitting the HS model to Datasets A to F of FOCUS (2006) 
FOCUS_2006_DFOP_ref_A_to_B

Results of fitting the DFOP model to Datasets A to B of FOCUS (2006) 
NAFTA_SOP_2015

Example datasets from the NAFTA SOP published 2015 
NAFTA_SOP_Attachment

Example datasets from Attachment 1 to the NAFTA SOP published 2015 
mccall81_245T

Datasets on aerobic soil metabolism of 2,4,5T in six soils 
schaefer07_complex_case

Metabolism data set used for checking the software quality of KinGUI 
synthetic_data_for_UBA_2014

Synthetic datasets for one parent compound with two metabolites 
experimental_data_for_UBA_2019

Experimental datasets used for development and testing of error models 
test_data_from_UBA_2014

Three experimental datasets from two water sediment systems and one soil 
mkinds

A dataset class for mkin 
print(<mkinds>)

Print mkinds objects 
Helper functions

geometric_mean()

Calculate the geometric mean 
mkinsub()

Function to set up a kinetic submodel for one state variable 
max_twa_parent()

Function to calculate maximum time weighted average concentrations from kinetic models fitted with mkinfit 
mkinpredict()

Produce predictions from a kinetic model using specific parameters 
mkin_wide_to_long()

Convert a dataframe with observations over time into long format 
mkin_long_to_wide()

Convert a dataframe from long to wide format 
print(<mkinmod>)

Print mkinmod objects 
transform_odeparms() backtransform_odeparms()

Functions to transform and backtransform kinetic parameters for fitting 
ilr() invilr()

Function to perform isometric logratio transformation 
sigma_twocomp()

Two component error model 
CAKE_export()

Export a list of datasets format to a CAKE study file 